simbiology toolbox Search Results


matlab simbiology  (MathWorks Inc)
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MathWorks Inc matlab simbiology
Matlab Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simbiology toolbox  (MathWorks Inc)
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MathWorks Inc simbiology toolbox
Simbiology Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simbiology  (MathWorks Inc)
90
MathWorks Inc simbiology
Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simbiology toolbox 2010b  (MathWorks Inc)
90
MathWorks Inc simbiology toolbox 2010b
Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
Simbiology Toolbox 2010b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simbiology matlab r2017a  (MathWorks Inc)
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Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
Simbiology Matlab R2017a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab and simbiology toolbox 2015/2016a  (MathWorks Inc)
90
MathWorks Inc matlab and simbiology toolbox 2015/2016a
Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
Matlab And Simbiology Toolbox 2015/2016a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab 2022b simbiology  (MathWorks Inc)
90
MathWorks Inc matlab 2022b simbiology
Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
Matlab 2022b Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pbpk model implemented in simbiology  (MathWorks Inc)
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MathWorks Inc pbpk model implemented in simbiology
Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
Pbpk Model Implemented In Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ordinary differential equations in simbiology  (MathWorks Inc)
90
MathWorks Inc ordinary differential equations in simbiology
Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
Ordinary Differential Equations In Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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2017b simbiology v5.7  (MathWorks Inc)
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MathWorks Inc 2017b simbiology v5.7
Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB <t>2010b</t> (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .
2017b Simbiology V5.7, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB 2010b (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .

Journal: Scientific Reports

Article Title: A new insight into role of phosphoketolase pathway in Synechocystis sp. PCC 6803

doi: 10.1038/s41598-020-78475-z

Figure Lengend Snippet: Schematic representation of the central carbon metabolism network, which was implemented in the multi-level kinetic model of Synechocystis . Blue indicates the reactions catalyzed by phosphoketolase. The model includes the Calvin-Benson cycle, glycogen synthesis (sink from glucose-6-phosphate), photorespiratory pathways, phosphoketolase pathway, glycolysis, the oxidative pentose pathway, Entner–Doudoroff pathway and sink reactions (representing the adjacent pathway and the calculation of biomass production). The reversibility of a particular reaction is indicated by two small arrows. Purple indicates the involved enzymes: RuBisCO ribulose-1,5-bisphosphate carboxylase oxygenase, PGK phosphoglycerate kinase, GAP glyceraldehyde-3-phosphate dehydrogenase, TPI triose-phosphate isomerase, ALDO aldolase, FBPase fructose-1,6 bisphosphatase, PFK phosphofructokinase, TKT transketolase, SBPase sedoheptulose-1,7 bisphosphatase, RPI phosphopentose isomerase, PPE phosphopentose epimerase, PRK phosphoribulokinase, GPI glucose-6-phosphate isomerase, G6PD glucose-6-phosphate dehydrogenase, PGD phosphogluconate dehydrogenase, PGPase phosphoglycolate phosphatase, PKET phosphoketolase, GOX glycolate oxidase, SGAT serineglyoxylate transaminase, HPR hydroxypyruvate reductase, GLYK glycerate kinase, AGT alanineglyoxylate transaminase, TSS tartronatesemialdehyde synthase, TSR tartronatesemialdehyde reductase, SHMT serine hydroxymethyltransferase, GLOX glyoxylate oxidase, PSAT * phosphoserine transaminase, PGM phosphoglycerate mutase, ENO enolase, EDD 6P-gluconate dehydratase, EDA 2-keto-3-deoxygluconate-6-phosphate aldolase (EDD and EDA are currently simplified into a single reaction in the model). Open book symbol indicates an involvement of metabolite in other reaction(s). The scheme was created in SimBiology toolbox of MATLAB 2010b (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .

Article Snippet: The scheme was created in SimBiology toolbox of MATLAB 2010b (The MathWorks, Inc., Natick, Massachusetts, United States of America), http://www.mathworks.com .

Techniques: